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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 190total RNA-seq
  • 181ChIP-seq
  • 105ATAC-seq
  • 89single cell RNA-seq
  • 28pCHi-C
  • 27DNase-seq
  • 11small RNA-seq
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
  • 1Hi-C
Assay category
  • 290Transcription
  • 181DNA binding
  • 140DNA accessibility
  • 13D chromatin structure
  • 1DNA methylation
Target of assay
  • 133histone
  • 133histone modification
  • 90narrow histone mark
  • 43broad histone mark
  • 33transcription factor
  • 17control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 134May, 2021
  • 88May, 2020
  • 49October, 2019
  • 48August, 2021
  • 47February, 2023
  • 44July, 2018
  • 39April, 2018
  • 36July, 2019
  • 33August, 2017
  • 30June, 2019
  • 30March, 2020
  • 25February, 2020
  • 11February, 2021
  • 7October, 2017
  • 4March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 483bam
  • 467bigWig
  • 302tsv
  • 173bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 649Homo sapiens
Biosample type
  • 297primary cell
  • 239tissue
  • 112in vitro differentiated cells
  • 1stem cell
Organ
  • 133pancreas
  • 77epithelium
  • 71brain
  • 57connective tissue
  • 24heart
  • 19kidney
  • 17adipose tissue
  • 16liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 6blood vessel
  • 6vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 511AMP
  • 138T1D
Genome assembly (visualization)
  • 487hg19
  • 426GRCh38
Lab
  • 480AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 51inconsistent ontology term
  • 1audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
files.file_type!
  • hic
BIOSAMPLE
ASSAY

649 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
small RNA-seq
snATAC-seq
MeRIP-seq
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
Hi-C
primary cell
monocyte264721
pancreatic alpha cell11
pancreatic beta cell11
pancreatic delta cell10
pancreatic ductal cell9
tissue
islet of Langerhans10221861241
liver26111
brain612
heart2141
frontal cortex2211
in vitro differentiated cells
neural progenitor cell72110
embryonic stem cell51141
adipocyte1741
cardiomyocytes12
induced pluripotent stem cell9
stem cell
mesenchymal stem cell1
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