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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
27
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
27
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
RNA binding protein
1
transcription factor
Date released
60
February, 2021
35
February, 2023
26
October, 2019
4
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
101
bam
84
bigWig
73
bed narrowPeak
58
tsv
24
bigBed narrowPeak
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
134
Homo sapiens
Biosample type
72
tissue
60
cell line
2
primary cell
Organ
918
pancreas
652
connective tissue
647
liver
509
epithelium
478
adipose tissue
376
heart
351
kidney
225
vasculature
220
blood vessel
165
brain
159
bone element
134
artery
122
limb
81
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
134
AMP
Genome assembly (visualization)
123
GRCh38
88
hg19
Lab
134
AMP-T2D consortium
files.file_type!
ibed
tagAlign
organ_slims!
gonad
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
134 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
4
2
tibial artery
1
1
23
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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