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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
26
total RNA-seq
14
ATAC-seq
1
Hi-C
1
single cell RNA-seq
Assay category
62
DNA binding
27
Transcription
14
DNA accessibility
1
3D chromatin structure
Target of assay
32
histone
32
histone modification
28
transcription factor
17
broad histone mark
15
narrow histone mark
control
2
RNA binding protein
2
chromatin remodeller
Date released
712
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
274
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
62
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
104
fastq
102
bam
102
bigWig
76
bed narrowPeak
44
bigBed narrowPeak
26
tsv
1
csv
Organism
104
Homo sapiens
Biosample type
73
primary cell
28
cell line
3
tissue
Organ
72
pancreas
61
epithelium
27
blood
27
bodily fluid
3
spleen
1
liver
Project
104
AMP
Genome assembly (visualization)
102
GRCh38
102
hg19
Lab
104
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
32
missing controlled_by
files.file_type!
ibed
tagAlign bed3+
target.investigated_as!
control
BIOSAMPLE
ASSAY
104 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 1 more…
cell line
GM12878
27
HepG2
1
tissue
spleen
3
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