Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
33
single cell RNA-seq
27
snATAC-seq
12
ATAC-seq
6
WGBS
3
Hi-C
2
Capture-C
Assay category
125
Transcription
39
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Date released
76
February, 2023
45
February, 2021
40
September, 2020
7
August, 2020
4
August, 2021
3
October, 2022
Available data
169
fastq
zippedFastqFolder
15
bigWig
6
tsv
4
bed narrowPeak
3
bed bedgraph
3
bedpe bed3+
3
cool
3
hic
txt
2
bed bed3+
Organism
175
Homo sapiens
Biosample type
171
primary cell
4
in vitro differentiated cells
Organ
72
epithelium
72
pancreas
4
connective tissue
Project
171
HPAP
4
AMP
Genome assembly (visualization)
10
GRCh38
7
hg19
Lab
3815
AMP-T2D consortium
337
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
85
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
files.file_type!
ibed
txt
zippedFastqFolder
BIOSAMPLE
ASSAY
175 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
Capture-C
primary cell
Langerhans cell
33
27
pancreatic alpha cell
42
7
6
1
exocrine cell
39
pancreatic beta cell
11
3
1
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Download