Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
DNase-seq
31
ChIP-seq
7
ATAC-seq
4
Hi-C
2
total RNA-seq
1
WGBS
Assay category
41
DNA accessibility
31
DNA binding
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
25
histone
25
histone modification
18
broad histone mark
7
narrow histone mark
6
control
Date released
32
June, 2019
27
October, 2019
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
Available data
72
bam
65
bed narrowPeak
60
bigWig
58
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
79
Homo sapiens
Biosample type
79
tissue
Organ
946
pancreas
786
liver
684
connective tissue
518
epithelium
491
adipose tissue
393
heart
286
brain
236
vasculature
230
blood vessel
209
kidney
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
65
GRCh38
65
hg19
Lab
79
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
ibed
lab.title!
Katalin Susztak, Upenn
month_released!
December, 2019
organ_slims!
nerve
BIOSAMPLE
ASSAY
79 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
tissue
tibial artery
2
23
1
1
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
distal epiphysis of femur
1
+ See 8 more…
See all biosamples
Download