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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
493
total RNA-seq
84
RNA microarray
6
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
2
ChIP-seq
2
pCHi-C
Assay category
499
Transcription
6
DNA accessibility
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
596
February, 2021
411
August, 2017
400
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
168
July, 2018
96
July, 2019
94
December, 2017
88
November, 2018
86
February, 2023
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
66
May, 2022
61
November, 2019
58
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
501
tsv
498
bam
495
bigWig
89
txt
6
csv
4
bed bedgraph
3
bed narrowPeak
2
bed bed3
2
bed bed3+
2
tagAlign
Organism
596
Homo sapiens
Biosample type
537
tissue
30
cell line
26
in vitro differentiated cells
3
primary cell
Organ
455
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
vasculature
26
epithelium
26
pancreas
8
kidney
skeleton
6
limb
3
liver
Project
596
AMP
Genome assembly (visualization)
502
hg19
496
GRCh38
Lab
596
AMP-T2D consortium
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent replicate
files.file_type!
ibed
lab.title!
Klaus Kaestner, Upenn
organ_slims!
skeleton
vasculature
BIOSAMPLE
ASSAY
596 results
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Clear Filters
total RNA-seq
RNA microarray
ATAC-seq
single cell RNA-seq
snDrop-seq
ChIP-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 5 more…
cell line
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
osteoblast
1
1
1
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