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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
26
total RNA-seq
11
ATAC-seq
3
single cell RNA-seq
1
Hi-C
Assay category
34
DNA binding
29
Transcription
11
DNA accessibility
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
315
August, 2021
314
October, 2019
218
June, 2019
202
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
35
fastq
34
bam
30
bed narrowPeak
30
bigBed narrowPeak
30
bigWig
25
tsv
Organism
75
Homo sapiens
Biosample type
47
tissue
28
cell line
Organ
27
blood
27
bodily fluid
14
kidney
12
brain
7
spleen
3
adipose tissue
3
blood vessel
3
connective tissue
3
heart
3
limb
3
vasculature
2
artery
2
liver
2
musculature of body
1
eye
1
nerve
1
pancreas
1
spinal cord
Project
75
AMP
Genome assembly (visualization)
42
GRCh38
31
hg19
Lab
61
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
1
inconsistent control
1
inconsistent ontology term
files.file_type!
ibed
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
75 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
tissue
kidney
11
3
spleen
7
Ammon's horn
1
C1 segment of cervical spinal cord
1
adipose tissue
1
+ See 23 more…
cell line
GM12878
27
HepG2
1
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