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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
6
ATAC-seq
6
WGBS
3
pCHi-C
3
small RNA-seq
2
DNase-seq
1
RNA microarray
Assay category
410
Transcription
73
DNA binding
18
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
19
April, 2020
12
July, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
442
bam
425
bigWig
402
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
509
Homo sapiens
Biosample type
508
tissue
2
primary cell
1
in vitro differentiated cells
Organ
938
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
492
AMP
19
LungMap
Genome assembly (visualization)
426
hg19
424
GRCh38
Lab
492
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
ibed
month_released!
January, 2021
organ_slims!
large intestine
BIOSAMPLE
ASSAY
511 results
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total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
lung
10
9
1
omental fat pad
5
11
1
1
2
+ See 3 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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