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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
DNase-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
31
DNA binding
24
Transcription
7
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
June, 2019
18
July, 2019
18
November, 2017
12
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
47
bam
26
bigWig
26
tsv
19
tagAlign
11
fastq
6
bed narrowPeak
6
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
69
Homo sapiens
Biosample type
56
tissue
13
primary cell
Organ
791
pancreas
687
liver
596
connective tissue
458
adipose tissue
413
epithelium
263
heart
244
kidney
159
bone element
158
vasculature
155
blood vessel
119
artery
69
brain
68
blood
68
bodily fluid
52
eye
41
limb
28
musculature of body
25
embryo
20
lung
19
nerve
19
spleen
16
skeleton
7
vein
2
intestine
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
69
AMP
Genome assembly (visualization)
27
hg19
19
GRCh38
Lab
69
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
ibed
month_released!
June, 2019
organ_slims!
pericardium
target.investigated_as!
histone
BIOSAMPLE
ASSAY
69 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
DNase-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
3
1
1
2
1
cerebellum (Hemisphere)
2
1
1
1
frontal cortex
2
1
1
temporal lobe
2
1
1
caudate nucleus
2
1
+ See 22 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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