Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
34
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
12
single cell RNA-seq
10
snATAC-seq
9
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
74
Transcription
34
DNA binding
27
DNA methylation
18
DNA accessibility
9
3D chromatin structure
Target of assay
28
transcription factor
7
control
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
310
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
116
bam
115
bigWig
65
tsv
37
bed narrowPeak
35
fastq
32
bigBed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
161
Homo sapiens
Biosample type
103
tissue
31
primary cell
28
cell line
Organ
27
blood
27
bodily fluid
25
heart
19
lung
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
11
liver
10
musculature of body
7
spleen
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
143
AMP
19
LungMap
Genome assembly (visualization)
121
hg19
109
GRCh38
Lab
143
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
2
inconsistent ontology term
1
inconsistent control
files.file_type!
ibed
organ_slims!
gonad
BIOSAMPLE
ASSAY
162 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
single cell RNA-seq
snATAC-seq
Hi-C
ATAC-seq
FAIRE-seq
tissue
lung
9
10
heart left ventricle
2
1
4
2
spleen
7
omental fat pad
4
1
right lobe of liver
2
2
1
+ See 28 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 20 more…
cell line
GM12878
27
HepG2
1
See all biosamples
Download