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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
227
ChIP-seq
9
WGBS
6
RRBS
5
total RNA-seq
4
DNase-seq
2
ATAC-seq
Assay category
227
DNA binding
15
DNA methylation
6
DNA accessibility
5
Transcription
Target of assay
140
histone modification
139
histone
81
broad histone mark
57
narrow histone mark
54
transcription factor
33
control
12
RNA binding protein
9
chromatin remodeller
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
48
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
149
fastq
144
bam
139
bigWig
114
bed narrowPeak
69
tagAlign
46
bigBed narrowPeak
29
bed broadPeak
15
bigBed broadPeak
14
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
tsv
Organism
253
Homo sapiens
Biosample type
144
tissue
68
in vitro differentiated cells
23
cell line
18
primary cell
Organ
pancreas
125
connective tissue
59
liver
57
adipose tissue
29
epithelium
26
musculature of body
18
blood
18
bodily fluid
7
spleen
Project
253
AMP
Genome assembly (visualization)
143
hg19
123
GRCh38
Lab
253
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
ibed
organ_slims!
pancreas
BIOSAMPLE
ASSAY
253 results
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Clear Filters
ChIP-seq
WGBS
RRBS
total RNA-seq
DNase-seq
ATAC-seq
tissue
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
spleen
7
+ See 3 more…
in vitro differentiated cells
adipocyte
67
1
cell line
GM12878
18
HepG2
5
primary cell
skeletal muscle myoblast
15
1
2
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