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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
Assay category
77
DNA binding
Target of assay
81
histone
81
histone modification
44
broad histone mark
41
transcription factor
36
control
36
narrow histone mark
11
RNA binding protein
2
chromatin remodeller
Date released
48
August, 2017
23
October, 2018
6
June, 2019
Available data
70
bam
64
fastq
41
bigWig
24
bed narrowPeak
11
bed bed3+
7
bigBed narrowPeak
3
tagAlign
Organism
77
Homo sapiens
Biosample type
41
tissue
30
in vitro differentiated cells
6
primary cell
Organ
446
liver
75
connective tissue
72
pancreas
57
blood
57
bodily fluid
41
adipose tissue
39
epithelium
37
heart
34
brain
31
vasculature
29
blood vessel
22
kidney
17
limb
14
artery
14
spleen
11
nerve
10
embryo
6
musculature of body
2
eye
2
vein
Project
77
AMP
Genome assembly (visualization)
42
GRCh38
42
hg19
Lab
77
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
ibed
BIOSAMPLE
ASSAY
77 results
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ChIP-seq
tissue
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
subcutaneous abdominal adipose tissue
5
adipose tissue
1
in vitro differentiated cells
adipocyte
30
primary cell
cardiac fibroblast
3
retinal pigment epithelial cell
2
mesenchymal stem cell
1
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