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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
5
MeRIP-seq
Assay category
65
DNA binding
Target of assay
200
histone
200
histone modification
112
broad histone mark
88
narrow histone mark
70
control
19
transcription factor
9
RNA binding protein
5
nucleotide modification
Date released
22
October, 2019
21
August, 2017
11
October, 2018
6
September, 2017
5
November, 2020
2
May, 2019
2
November, 2019
1
May, 2021
Available data
59
bam
30
fastq
3
tagAlign
2
bed bed3+
Organism
69
Homo sapiens
Biosample type
46
tissue
12
primary cell
11
cell line
1
in vitro differentiated cells
Organ
108
liver
53
pancreas
35
connective tissue
31
brain
30
epithelium
24
adipose tissue
22
vasculature
21
blood vessel
20
heart
17
limb
12
kidney
11
nerve
9
artery
8
spleen
7
embryo
6
blood
6
bodily fluid
6
musculature of body
2
vein
1
eye
0
mammary gland
Project
70
AMP
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
65
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
5
inconsistent ontology term
files.file_type!
ibed
BIOSAMPLE
ASSAY
70 results
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ChIP-seq
MeRIP-seq
tissue
islet of Langerhans
13
2
tibial nerve
11
body of pancreas
9
tibial artery
5
pancreas
3
+ See 2 more…
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
cell line
Panc1
6
EndoC_BH1
2
3
in vitro differentiated cells
pancreatic PP cell
1
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