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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
Hi-C
6
ATAC-seq
3
ChIP-seq
2
pCHi-C
2
total RNA-seq
Assay category
11
3D chromatin structure
6
DNA accessibility
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
328
November, 2017
237
August, 2017
225
October, 2019
200
May, 2022
189
February, 2023
148
February, 2021
137
June, 2019
136
May, 2021
115
May, 2019
102
May, 2020
94
December, 2017
88
November, 2018
74
October, 2018
59
September, 2020
57
April, 2019
47
September, 2018
42
August, 2021
41
November, 2019
40
May, 2024
38
July, 2019
35
December, 2018
25
January, 2019
24
February, 2018
19
April, 2020
19
March, 2020
16
January, 2021
12
November, 2020
11
September, 2017
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
May, 2023
Available data
tsv
20
bigWig
17
bam
12
bedpe bed3+
11
hic
3
bed narrowPeak
2
ibed
1
bed broadPeak
1
bedpe
1
fastq
Organism
24
Homo sapiens
Biosample type
17
tissue
4
in vitro differentiated cells
2
cell line
1
primary cell
Organ
13
pancreas
3
epithelium
2
blood vessel
2
heart
2
musculature of body
2
vasculature
1
liver
1
vein
Project
19
AMP
5
T1D
Genome assembly (visualization)
20
hg19
5
GRCh38
Lab
19
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
6
inconsistent ontology term
files.file_type!
tagAlign
tsv
organ_slims!
kidney
BIOSAMPLE
ASSAY
24 results
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Clear Filters
Hi-C
ATAC-seq
ChIP-seq
pCHi-C
total RNA-seq
tissue
islet of Langerhans
1
5
2
2
psoas muscle
2
aorta
1
heart left ventricle
1
heart right ventricle
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
lymphocyte of B lineage (iPSC)
1
1
cell line
EndoC_BH1
1
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
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