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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
4
ChIP-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
34
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA methylation
4
DNA binding
Target of assay
20
histone
histone modification
12
broad histone mark
8
narrow histone mark
4
control
Date released
35
June, 2019
10
July, 2019
5
August, 2017
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2019
1
May, 2022
Available data
43
bam
41
bigWig
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
tagAlign
txt
Organism
60
Homo sapiens
Biosample type
54
tissue
6
primary cell
Organ
767
pancreas
563
connective tissue
441
adipose tissue
420
epithelium
322
liver
277
heart
252
kidney
154
vasculature
150
blood vessel
114
artery
77
brain
73
limb
71
bone element
60
musculature of body
57
eye
22
embryo
20
lung
19
nerve
18
ureter
17
blood
17
bodily fluid
13
spleen
12
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
45
hg19
40
GRCh38
Lab
60
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
tagAlign
txt
target.investigated_as!
histone modification
transcription factor
BIOSAMPLE
ASSAY
60 results
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DNase-seq
Hi-C
total RNA-seq
RRBS
ChIP-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
+ See 3 more…
primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
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