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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
44
ATAC-seq
5
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
57
Transcription
46
DNA accessibility
5
DNA binding
Target of assay
2
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
60
February, 2021
35
February, 2023
5
May, 2019
3
July, 2019
2
August, 2021
2
June, 2019
1
February, 2020
Available data
76
bam
64
bigWig
57
tsv
53
bed narrowPeak
tagAlign
5
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
108
Homo sapiens
Biosample type
60
cell line
46
tissue
2
primary cell
Organ
913
pancreas
702
liver
660
connective tissue
511
epithelium
482
adipose tissue
380
heart
288
kidney
226
vasculature
220
blood vessel
166
brain
159
bone element
135
artery
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
1
bone marrow
1
lymph node
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
108
AMP
Genome assembly (visualization)
103
GRCh38
68
hg19
Lab
108
AMP-T2D consortium
files.file_type!
tagAlign
xls
month_released!
March, 2020
organ_slims!
limb
BIOSAMPLE
ASSAY
108 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
tissue
coronary artery
1
36
5
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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