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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
19
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
174
Transcription
82
DNA accessibility
19
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
647
February, 2021
326
August, 2017
325
November, 2017
309
May, 2021
291
May, 2020
289
August, 2021
218
October, 2019
213
June, 2019
170
February, 2023
168
July, 2018
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
66
May, 2022
61
November, 2019
60
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
117
tsv
106
bed narrowPeak
64
xls
57
txt
49
bam
47
bigWig
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
288
Homo sapiens
Biosample type
223
tissue
44
cell line
22
in vitro differentiated cells
Organ
130
kidney
92
heart
31
liver
8
embryo
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
289
AMP
Genome assembly (visualization)
89
GRCh38
45
hg19
Lab
128
Katalin Susztak, Upenn
121
AMP-T2D consortium
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
tagAlign
zippedFastqFolder
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
289 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 9 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
1
adipocyte
1
1
osteoblast
1
1
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