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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
59
total RNA-seq
17
pCHi-C
5
ATAC-seq
Assay category
70
DNA binding
59
Transcription
5
DNA accessibility
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
198
May, 2022
151
May, 2021
132
August, 2021
102
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
40
May, 2024
19
April, 2020
16
January, 2021
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2023
3
March, 2019
3
October, 2022
1
October, 2017
Available data
175
bigWig
135
bam
114
bed narrowPeak
tagAlign
51
tsv
2
bed bed3+
Organism
151
Homo sapiens
Biosample type
102
primary cell
47
in vitro differentiated cells
2
tissue
Organ
1
bone element
1
bone marrow
1
connective tissue
1
pancreas
1
thymus
Project
83
AMP
68
T1D
Genome assembly (visualization)
91
hg19
51
GRCh38
Lab
AMP-T2D consortium
151
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
tagAlign
lab.title!
AMP-T2D consortium
Bing Ren, UCSD
BIOSAMPLE
ASSAY
151 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
primary cell
monocyte
51
1
CD8-positive, alpha-beta T cell
33
2
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
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in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
pancreas
1
thymus
1
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