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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
6
single cell RNA-seq
6
total RNA-seq
4
DNase-seq
2
ATAC-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
68
DNA binding
12
Transcription
6
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
52
histone
52
histone modification
36
broad histone mark
16
narrow histone mark
14
control
2
RNA binding protein
2
transcription factor
Date released
45
May, 2019
26
October, 2019
6
August, 2021
6
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
Available data
80
bam
65
bigWig
60
bed narrowPeak
58
bigBed narrowPeak
13
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
90
Homo sapiens
Biosample type
89
tissue
1
primary cell
Organ
927
pancreas
705
liver
662
connective tissue
epithelium
483
adipose tissue
heart
307
kidney
230
vasculature
224
blood vessel
168
brain
159
bone element
135
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
90
AMP
Genome assembly (visualization)
65
GRCh38
65
hg19
Lab
90
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
tagAlign
lab.title!
KPMP
organ_slims!
epithelium
heart
BIOSAMPLE
ASSAY
90 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
tissue
tibial artery
23
1
2
1
aorta
13
4
1
2
1
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
pulmonary artery
2
primary cell
smooth muscle cell of the brain vasculature
1
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