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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
32
DNase-seq
16
total RNA-seq
12
single cell RNA-seq
10
snATAC-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
FAIRE-seq
Assay category
54
DNA binding
46
DNA accessibility
32
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
42
histone
42
histone modification
22
broad histone mark
20
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
October, 2019
30
June, 2019
28
May, 2019
25
November, 2017
19
April, 2020
18
July, 2019
12
February, 2020
3
March, 2020
2
November, 2018
2
October, 2017
1
February, 2023
Available data
160
bam
146
bigWig
128
bed narrowPeak
127
bigBed narrowPeak
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
139
Homo sapiens
Biosample type
119
tissue
21
primary cell
Organ
909
pancreas
698
liver
658
connective tissue
482
adipose tissue
482
epithelium
379
heart
183
vasculature
182
kidney
177
blood vessel
159
bone element
120
brain
109
artery
81
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
121
AMP
19
LungMap
Genome assembly (visualization)
88
GRCh38
74
hg19
Lab
121
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
tagAlign
lab.title!
Katalin Susztak, Upenn
month_released!
October, 2019
BIOSAMPLE
ASSAY
140 results
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ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
small RNA-seq
ATAC-seq
Hi-C
pCHi-C
RRBS
FAIRE-seq
tissue
lung
9
10
1
brain
1
14
1
1
temporal lobe
15
1
1
angular gyrus
13
layer of hippocampus
8
+ See 23 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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