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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
32
DNase-seq
16
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
36
DNA accessibility
32
DNA binding
23
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
42
histone
42
histone modification
broad histone mark
20
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
October, 2019
30
June, 2019
18
July, 2019
18
November, 2017
13
May, 2019
12
February, 2020
2
March, 2020
2
November, 2018
2
October, 2017
1
February, 2023
Available data
102
bam
89
bigWig
70
bed narrowPeak
69
bigBed narrowPeak
43
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
tagAlign
25
tsv
15
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
98
Homo sapiens
Biosample type
77
tissue
21
primary cell
Organ
842
pancreas
677
liver
626
connective tissue
466
adipose tissue
451
epithelium
325
heart
312
kidney
161
vasculature
159
bone element
155
blood vessel
109
artery
98
brain
69
blood
69
bodily fluid
69
musculature of body
49
limb
40
eye
33
embryo
21
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
98
AMP
Genome assembly (visualization)
66
GRCh38
59
hg19
Lab
98
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
tagAlign
lab.title!
Maike Sander, UCSD
month_released!
October, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
98 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
1
14
1
1
temporal lobe
7
1
1
angular gyrus
6
cerebellum (Hemisphere)
2
1
1
1
1
frontal cortex
2
2
1
1
+ See 22 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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