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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
total RNA-seq
109
ATAC-seq
105
single cell RNA-seq
82
snATAC-seq
70
ChIP-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
308
Transcription
191
DNA accessibility
70
DNA binding
1
3D chromatin structure
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
151
May, 2021
128
August, 2021
78
May, 2022
62
February, 2023
45
May, 2020
40
September, 2020
39
February, 2021
19
April, 2020
16
January, 2021
14
May, 2023
Available data
220
bigWig
204
bam
196
bed narrowPeak
124
fastq
96
tsv
tagAlign
73
zippedFastqFolder
64
xls
63
txt
2
bed bed3+
1
hic
Organism
591
Homo sapiens
Biosample type
327
primary cell
213
tissue
47
in vitro differentiated cells
5
cell line
Organ
203
pancreas
epithelium
142
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
249
AMP
172
HPAP
152
T1D
19
LungMap
Genome assembly (visualization)
171
GRCh38
155
hg19
Lab
3239
AMP-T2D consortium
259
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
audit script error
5
inconsistent ontology term
files.file_type!
tagAlign
organ_slims!
epithelium
BIOSAMPLE
ASSAY
592 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
primary cell
Langerhans cell
85
48
monocyte
53
1
exocrine cell
39
CD8-positive, alpha-beta T cell
4
33
1
peripheral blood mononuclear cell
8
+ See 33 more…
tissue
kidney
49
75
11
6
1
islet of Langerhans
11
29
6
lung
9
10
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
5
37
cell line
EndoC_BH1
3
2
See all biosamples
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