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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
total RNA-seq
109
ATAC-seq
70
ChIP-seq
24
snATAC-seq
16
pCHi-C
11
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
175
Transcription
133
DNA accessibility
70
DNA binding
1
3D chromatin structure
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
150
May, 2021
128
August, 2021
45
May, 2020
24
May, 2022
23
February, 2023
16
January, 2021
14
May, 2023
Available data
220
bigWig
204
bam
196
bed narrowPeak
96
tsv
tagAlign
64
xls
63
txt
24
fastq
2
bed bed3+
1
hic
Organism
400
Homo sapiens
Biosample type
194
tissue
154
primary cell
47
in vitro differentiated cells
5
cell line
Organ
142
kidney
51
pancreas
8
blood
8
bodily fluid
1
bone element
bone marrow
1
connective tissue
1
thymus
Project
249
AMP
151
T1D
Genome assembly (visualization)
171
GRCh38
155
hg19
Lab
3598
AMP-T2D consortium
324
Klaus Kaestner, Upenn
258
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
files.file_type!
tagAlign
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
400 results
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total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
pCHi-C
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
tissue
kidney
49
75
6
11
1
islet of Langerhans
11
29
6
pancreas
1
4
thymus
1
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
33
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 30 more…
in vitro differentiated cells
embryonic stem cell
5
5
37
cell line
EndoC_BH1
3
2
See all biosamples
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