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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
13
ATAC-seq
10
total RNA-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
14
DNA accessibility
14
DNA binding
13
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
2
control
Date released
June, 2019
11
August, 2017
10
July, 2019
8
February, 2021
8
February, 2023
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
27
bed narrowPeak
27
bigWig
22
bam
tagAlign
13
bed broadPeak
9
tsv
6
bigBed narrowPeak
5
txt
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
Organism
54
Homo sapiens
Biosample type
51
tissue
3
primary cell
Organ
923
pancreas
703
liver
644
connective tissue
497
epithelium
482
adipose tissue
352
heart
kidney
223
vasculature
219
blood vessel
159
bone element
138
brain
133
artery
90
limb
69
blood
69
bodily fluid
54
eye
43
nerve
38
musculature of body
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
54
AMP
Genome assembly (visualization)
31
hg19
20
GRCh38
Lab
54
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
tagAlign
month_released!
June, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
7
1
1
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
acetabular part of hip bone
1
1
+ See 12 more…
primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
See all biosamples
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