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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
42
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
401
Transcription
42
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
25
histone
25
histone modification
control
17
transcription factor
16
broad histone mark
9
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
44
August, 2017
12
July, 2019
5
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
424
bigWig
422
bam
401
tsv
24
fastq
12
bed narrowPeak
9
bigBed narrowPeak
tagAlign
5
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bedpe bed3+
1
bigBed broadPeak
Organism
458
Homo sapiens
Biosample type
456
tissue
2
primary cell
1
in vitro differentiated cells
Organ
870
pancreas
629
connective tissue
572
liver
489
epithelium
459
adipose tissue
369
heart
342
kidney
210
vasculature
205
blood vessel
159
bone element
154
brain
128
artery
105
limb
77
musculature of body
60
eye
51
blood
51
bodily fluid
32
nerve
30
embryo
20
lung
20
vein
18
ureter
16
skeleton
11
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
459
AMP
Genome assembly (visualization)
424
hg19
423
GRCh38
Lab
459
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
tagAlign
month_released!
November, 2018
target.investigated_as!
control
BIOSAMPLE
ASSAY
459 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
DNase-seq
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
24
3
subcutaneous adipose tissue
7
2
1
1
1
white adipose tissue
12
omental fat pad
5
3
1
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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