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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
44
ATAC-seq
5
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
46
DNA accessibility
5
DNA binding
Target of assay
2
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
60
February, 2021
35
February, 2023
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
76
bam
64
bigWig
58
tsv
53
bed narrowPeak
tagAlign
5
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
109
Homo sapiens
Biosample type
60
cell line
47
tissue
2
primary cell
Organ
890
pancreas
698
liver
658
connective tissue
482
adipose tissue
463
epithelium
379
heart
324
kidney
183
vasculature
177
blood vessel
159
bone element
120
brain
109
artery
81
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
109
AMP
Genome assembly (visualization)
103
GRCh38
68
hg19
Lab
109
AMP-T2D consortium
files.file_type!
tagAlign
month_released!
October, 2019
September, 2020
BIOSAMPLE
ASSAY
109 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
tissue
coronary artery
1
36
5
2
pulmonary artery
2
tibial artery
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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