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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
ChIP-seq
89
total RNA-seq
6
RRBS
5
DNase-seq
4
ATAC-seq
3
WGBS
1
FAIRE-seq
Assay category
169
DNA binding
89
Transcription
10
DNA accessibility
9
DNA methylation
Target of assay
100
histone modification
99
histone
50
narrow histone mark
48
broad histone mark
35
transcription factor
34
control
8
RNA binding protein
3
chromatin remodeller
Date released
328
November, 2017
321
February, 2021
309
May, 2021
294
August, 2021
291
May, 2020
277
August, 2017
264
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
8
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
269
fastq
265
bam
255
bigWig
139
bed narrowPeak
89
tsv
tagAlign
40
bed broadPeak
40
bigBed narrowPeak
29
bed bed3+
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
277
Homo sapiens
Biosample type
176
tissue
54
in vitro differentiated cells
47
primary cell
Organ
172
pancreas
103
connective tissue
adipose tissue
34
liver
29
epithelium
11
musculature of body
Project
277
AMP
Genome assembly (visualization)
224
hg19
216
GRCh38
Lab
277
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
16
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tagAlign
month_released!
April, 2020
November, 2018
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
277 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
33
89
1
1
liver
28
1
3
skeletal muscle tissue
7
4
pancreas
7
right lobe of liver
1
1
in vitro differentiated cells
adipocyte
53
1
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
skeletal muscle myoblast
3
1
2
pancreatic acinar cell
1
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