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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
638
total RNA-seq
129
ATAC-seq
84
RNA microarray
29
snATAC-seq
19
single cell RNA-seq
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
657
Transcription
158
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Date released
707
February, 2021
328
November, 2017
326
August, 2017
309
May, 2021
295
August, 2021
291
May, 2020
265
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
575
tsv
573
bam
554
bigWig
122
fastq
96
txt
88
bed narrowPeak
12
bed bed3
tagAlign
7
bed bedgraph
6
bed bed3+
6
csv
1
bed broadPeak
1
bedpe
1
hic
Organism
916
Homo sapiens
Biosample type
645
tissue
136
primary cell
94
cell line
42
in vitro differentiated cells
Organ
469
connective tissue
387
adipose tissue
158
bone element
96
heart
95
artery
95
blood vessel
95
vasculature
93
pancreas
84
epithelium
31
eye
16
skeleton
8
kidney
6
limb
3
liver
1
brain
Project
773
AMP
121
HPAP
23
T1D
Genome assembly (visualization)
617
hg19
600
GRCh38
Lab
765
AMP-T2D consortium
121
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
139
inconsistent ontology term
32
audit script error
1
inconsistent replicate
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
917 results
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Clear Filters
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
single cell RNA-seq
WGBS
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
coronary artery
35
islet of Langerhans
5
15
2
1
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primary cell
Langerhans cell
27
12
exocrine cell
39
pancreatic alpha cell
27
6
pancreatic beta cell
10
gabaergic neuron
3
+ See 4 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
3
2
1
HepG2
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
5
5
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
+ See 3 more…
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