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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
336
total RNA-seq
114
ATAC-seq
49
single cell RNA-seq
32
ChIP-seq
1
pCHi-C
Assay category
385
Transcription
114
DNA accessibility
32
DNA binding
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
Date released
707
February, 2021
328
November, 2017
326
August, 2017
309
May, 2021
295
August, 2021
291
May, 2020
265
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
519
bam
496
bigWig
379
tsv
123
fastq
73
bed narrowPeak
tagAlign
14
bigBed narrowPeak
1
csv
Organism
532
Homo sapiens
Biosample type
268
primary cell
263
tissue
1
cell line
Organ
229
pancreas
144
liver
94
epithelium
2
connective tissue
Project
487
AMP
45
T1D
Genome assembly (visualization)
469
hg19
424
GRCh38
Lab
487
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
32
missing controlled_by
files.file_type!
tagAlign
month_released!
December, 2017
BIOSAMPLE
ASSAY
532 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
primary cell
pancreatic ductal cell
4
4
3
13
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
pancreatic beta cell
10
4
9
CD4-positive, alpha-beta memory T cell
22
pancreatic alpha cell
10
3
7
+ See 40 more…
tissue
liver
143
islet of Langerhans
120
cell line
HepG2
1
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