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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
359
ChIP-seq
187
DNase-seq
Assay category
359
DNA binding
187
DNA accessibility
Target of assay
248
transcription factor
68
control
66
recombinant protein
41
RNA binding protein
40
histone
40
histone modification
23
narrow histone mark
17
broad histone mark
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
707
February, 2021
328
November, 2017
326
August, 2017
309
May, 2021
295
August, 2021
291
May, 2020
265
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
610
bam
544
bigWig
523
bed narrowPeak
522
bigBed narrowPeak
324
fastq
257
bed broadPeak
251
bigBed broadPeak
187
bed bed3+
tagAlign
3
tar
Organism
546
Homo sapiens
Biosample type
303
cell line
179
tissue
64
primary cell
Organ
305
liver
81
kidney
55
brain
43
musculature of body
35
heart
32
limb
26
epithelium
18
connective tissue
18
ureter
13
vasculature
8
blood vessel
7
eye
4
pancreas
2
artery
1
adipose tissue
Project
546
AMP
Genome assembly (visualization)
450
hg19
436
GRCh38
Lab
546
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
10
inconsistent control read length
4
inconsistent control run_type
files.file_type!
tagAlign
month_released!
September, 2020
organ_slims!
large intestine
BIOSAMPLE
ASSAY
546 results
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Clear Filters
ChIP-seq
DNase-seq
cell line
HepG2
303
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 36 more…
primary cell
cardiac fibroblast
5
3
skeletal muscle satellite cell
8
mesenchymal stem cell
7
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
+ See 17 more…
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