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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
total RNA-seq
101
ATAC-seq
10
MeRIP-seq
1
DNase-seq
1
pCHi-C
Assay category
194
Transcription
102
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
699
February, 2021
328
November, 2017
326
August, 2017
309
May, 2021
291
May, 2020
235
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
165
August, 2021
June, 2019
115
May, 2019
97
July, 2019
94
December, 2017
88
November, 2018
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
57
April, 2019
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
9
October, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
289
bam
265
bigWig
193
tsv
tagAlign
29
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
307
Homo sapiens
Biosample type
153
primary cell
147
tissue
7
cell line
Organ
144
liver
10
pancreas
6
connective tissue
6
epithelium
Project
262
AMP
45
T1D
Genome assembly (visualization)
239
hg19
194
GRCh38
Lab
252
AMP-T2D consortium
45
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
14
inconsistent ontology term
files.file_type!
tagAlign
month_released!
June, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
307 results
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Clear Filters
total RNA-seq
ATAC-seq
MeRIP-seq
DNase-seq
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
osteoblast
4
1
1
B cell
2
2
+ See 25 more…
tissue
liver
143
islet of Langerhans
4
cell line
EndoC_BH1
6
HepG2
1
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