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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
total RNA-seq
16
ATAC-seq
10
MeRIP-seq
3
Hi-C
1
ChIP-seq
Assay category
41
Transcription
16
DNA accessibility
3
3D chromatin structure
1
DNA binding
Target of assay
5
control
5
nucleotide modification
1
histone
1
histone modification
1
narrow histone mark
Date released
172
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
58
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
44
bam
43
bigWig
40
tsv
3
bed narrowPeak
3
bedpe bed3+
3
cool
3
hic
tagAlign
Organism
71
Homo sapiens
Biosample type
41
tissue
27
cell line
3
primary cell
Organ
71
pancreas
32
epithelium
8
connective tissue
3
heart
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
67
AMP
3
HPAP
1
T1D
Genome assembly (visualization)
44
hg19
41
GRCh38
Lab
57
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Klaus Kaestner, Upenn
1
Kyle Gaulton, UCSD
Audit category:
27
inconsistent ontology term
3
audit script error
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
71 results
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Clear Filters
total RNA-seq
ATAC-seq
MeRIP-seq
Hi-C
ChIP-seq
tissue
islet of Langerhans
36
4
pancreas
1
cell line
EndoC_BH1
4
16
6
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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