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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
456
total RNA-seq
85
RNA microarray
40
ChIP-seq
6
ATAC-seq
6
WGBS
3
pCHi-C
3
small RNA-seq
2
DNase-seq
Assay category
459
Transcription
40
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
25
histone
histone modification
23
control
17
transcription factor
16
broad histone mark
9
narrow histone mark
5
RNA binding protein
Date released
528
February, 2021
24
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
499
bam
481
bigWig
459
tsv
84
txt
43
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
tagAlign
Organism
600
Homo sapiens
Biosample type
597
tissue
3
primary cell
1
in vitro differentiated cells
Organ
791
pancreas
660
liver
603
connective tissue
458
adipose tissue
428
epithelium
324
kidney
290
heart
159
bone element
159
vasculature
154
blood vessel
115
artery
80
brain
73
limb
68
blood
68
bodily fluid
61
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
600
AMP
1
T1D
Genome assembly (visualization)
482
hg19
481
GRCh38
Lab
600
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
tagAlign
organ_slims!
skeleton
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
601 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
tissue
adipose tissue
382
1
3
3
1
bone element
84
bone tissue
58
subcutaneous adipose tissue
7
1
12
1
1
omental fat pad
5
11
1
1
2
+ See 4 more…
primary cell
mesenchymal stem cell of adipose
1
1
megakaryocyte
1
in vitro differentiated cells
white fat cell
1
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