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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
56
total RNA-seq
46
ATAC-seq
8
snATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
88
DNA binding
58
DNA accessibility
58
Transcription
Target of assay
52
transcription factor
21
histone
21
histone modification
14
broad histone mark
13
control
11
RNA binding protein
10
chromatin remodeller
7
narrow histone mark
Date released
60
February, 2021
35
February, 2023
27
December, 2018
26
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
January, 2018
Available data
162
bam
140
bigWig
128
bed narrowPeak
79
bigBed narrowPeak
60
fastq
58
tsv
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
204
Homo sapiens
Biosample type
121
cell line
73
tissue
10
primary cell
Organ
927
pancreas
705
liver
662
connective tissue
517
epithelium
483
adipose tissue
387
heart
354
kidney
230
vasculature
224
blood vessel
168
brain
159
bone element
135
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
196
AMP
8
T1D
Genome assembly (visualization)
178
GRCh38
144
hg19
Lab
196
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
204 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
cell line
GM12878
60
1
smooth muscle cell of the coronary artery
52
8
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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