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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
38
DNase-seq
7
total RNA-seq
6
Hi-C
2
ATAC-seq
1
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
83
DNA binding
41
DNA accessibility
7
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
64
histone
64
histone modification
43
broad histone mark
21
narrow histone mark
19
control
Date released
90
October, 2019
32
June, 2019
7
May, 2019
5
July, 2019
3
February, 2020
1
March, 2020
1
May, 2021
Available data
128
bam
106
bigWig
99
bed narrowPeak
97
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
38
bed bed3+
7
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
139
Homo sapiens
Biosample type
116
tissue
23
primary cell
Organ
927
pancreas
705
liver
662
connective tissue
517
epithelium
483
adipose tissue
387
heart
354
kidney
230
vasculature
224
blood vessel
168
brain
159
bone element
135
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
138
AMP
1
T1D
Genome assembly (visualization)
107
hg19
102
GRCh38
Lab
138
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
tagAlign
organ_slims!
skeleton
BIOSAMPLE
ASSAY
139 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
FAIRE-seq
WGBS
pCHi-C
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
+ See 3 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
megakaryocyte
1
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