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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
DNase-seq
17
total RNA-seq
8
ChIP-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
35
DNA accessibility
24
Transcription
8
DNA binding
2
3D chromatin structure
1
DNA methylation
Target of assay
histone
86
histone modification
61
narrow histone mark
25
broad histone mark
10
control
1
RNA binding protein
1
transcription factor
Date released
28
June, 2019
16
July, 2019
12
February, 2020
4
November, 2017
3
May, 2019
2
March, 2020
2
November, 2018
2
October, 2017
2
October, 2019
1
February, 2023
Available data
71
bam
49
bigWig
32
bed bed3+
32
bed narrowPeak
32
bigBed narrowPeak
31
bed broadPeak
31
bigBed broadPeak
26
tsv
tagAlign
7
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
72
Homo sapiens
Biosample type
62
tissue
10
primary cell
Organ
791
pancreas
661
liver
603
connective tissue
458
adipose tissue
epithelium
324
kidney
290
heart
159
bone element
159
vasculature
154
blood vessel
115
artery
80
brain
73
limb
68
blood
68
bodily fluid
61
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
72
AMP
Genome assembly (visualization)
45
GRCh38
39
hg19
Lab
72
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
tagAlign
organ_slims!
epithelium
target.investigated_as!
histone
BIOSAMPLE
ASSAY
72 results
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DNase-seq
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
14
1
1
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
1
temporal lobe
1
2
1
Ammon's horn
1
1
1
+ See 22 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
See all biosamples
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