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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
33
DNase-seq
17
total RNA-seq
5
ATAC-seq
4
pCHi-C
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
WGBS
1
FAIRE-seq
Assay category
120
DNA binding
39
DNA accessibility
24
Transcription
4
DNA methylation
3
3D chromatin structure
Target of assay
94
histone
94
histone modification
65
narrow histone mark
29
broad histone mark
20
control
9
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
48
October, 2019
30
June, 2019
28
May, 2019
25
November, 2017
18
July, 2019
12
February, 2020
11
November, 2018
7
December, 2018
7
January, 2019
4
March, 2020
3
October, 2017
1
February, 2023
Available data
267
bam
238
bigWig
217
bed narrowPeak
140
bigBed narrowPeak
tagAlign
48
bed broadPeak
45
fastq
39
bigBed broadPeak
36
bed bed3+
28
tsv
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
194
Homo sapiens
Biosample type
173
tissue
21
primary cell
Organ
927
pancreas
705
liver
662
connective tissue
517
epithelium
483
adipose tissue
387
heart
354
kidney
230
vasculature
224
blood vessel
168
brain
159
bone element
135
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
194
AMP
Genome assembly (visualization)
151
GRCh38
135
hg19
Lab
194
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
tagAlign
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
194 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
WGBS
FAIRE-seq
tissue
spleen
20
1
1
1
2
brain
6
14
1
1
1
temporal lobe
15
1
1
angular gyrus
13
layer of hippocampus
8
+ See 59 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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