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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
94
ChIP-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
197
DNA accessibility
94
DNA binding
7
DNA methylation
1
Transcription
Target of assay
68
transcription factor
25
RNA binding protein
19
histone
19
histone modification
16
recombinant protein
14
control
11
narrow histone mark
8
broad histone mark
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
408
August, 2017
399
May, 2021
391
November, 2017
341
May, 2020
313
October, 2019
255
August, 2021
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
91
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
298
bam
283
bigWig
276
bed narrowPeak
276
bigBed narrowPeak
196
bed bed3+
196
bed broadPeak
196
bigBed broadPeak
81
fastq
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
299
Homo sapiens
Biosample type
189
tissue
56
primary cell
54
cell line
Organ
81
kidney
50
liver
43
musculature of body
35
heart
32
brain
32
limb
20
epithelium
19
connective tissue
18
ureter
13
blood
13
bodily fluid
11
pancreas
9
spleen
7
eye
7
vasculature
5
blood vessel
2
adipose tissue
2
artery
Project
299
AMP
Genome assembly (visualization)
282
GRCh38
251
hg19
Lab
299
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
tagAlign bed3+
xls
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
299 results
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Clear Filters
DNase-seq
ChIP-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 18 more…
cell line
HepG2
40
1
GM12878
13
See all biosamples
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