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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
single cell RNA-seq
25
total RNA-seq
23
ChIP-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
117
Transcription
23
DNA binding
12
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
649
February, 2021
314
May, 2020
314
November, 2017
259
May, 2021
212
August, 2017
200
May, 2022
192
June, 2019
170
February, 2023
168
July, 2018
165
August, 2021
104
October, 2019
96
July, 2019
88
November, 2018
63
December, 2017
59
September, 2020
57
March, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
23
February, 2018
23
January, 2019
22
February, 2020
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2019
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
117
tsv
33
bam
28
bigWig
23
bed narrowPeak
8
tagAlign
2
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
164
Homo sapiens
Biosample type
95
tissue
41
cell line
28
in vitro differentiated cells
1
primary cell
Organ
92
heart
29
liver
8
embryo
6
blood vessel
vasculature
5
connective tissue
4
pancreas
3
epithelium
2
artery
2
kidney
1
adipose tissue
Project
165
AMP
Genome assembly (visualization)
41
hg19
25
GRCh38
Lab
128
AMP-T2D consortium
Katalin Susztak, Upenn
33
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
tagAlign bed3+
lab.title!
Katalin Susztak, Upenn
organ_slims!
vasculature
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
165 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aortic valve
4
+ See 8 more…
cell line
HepG2
9
15
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
7
10
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
1
See all biosamples
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