Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
10
total RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
17
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
RNA binding protein
1
broad histone mark
Date released
35
August, 2021
2
March, 2019
Available data
13
bed narrowPeak
13
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
37
Homo sapiens
Biosample type
33
cell line
4
tissue
Organ
30
liver
4
pancreas
2
kidney
Project
37
AMP
Genome assembly (visualization)
16
hg19
1
GRCh38
Lab
3807
AMP-T2D consortium
338
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
37
Bing Ren, UCSD
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
files.file_type!
tagAlign bed3+
organ_slims!
lymph node
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
37 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
17
9
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
1
Download