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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
517
ChIP-seq
189
total RNA-seq
24
ATAC-seq
4
Hi-C
4
WGBS
4
pCHi-C
3
DNase-seq
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
517
DNA binding
193
Transcription
27
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
292
transcription factor
113
control
109
histone modification
108
histone
66
recombinant protein
62
narrow histone mark
46
broad histone mark
39
RNA binding protein
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
November, 2018
54
August, 2017
40
May, 2022
35
August, 2021
12
January, 2019
10
July, 2019
8
December, 2018
7
October, 2019
5
December, 2019
4
March, 2020
3
February, 2021
2
June, 2019
1
February, 2020
1
October, 2017
Available data
643
bam
580
bigWig
427
fastq
400
bed narrowPeak
316
bigBed narrowPeak
175
tsv
86
tagAlign
60
bed broadPeak
60
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
754
Homo sapiens
Biosample type
370
tissue
355
cell line
15
in vitro differentiated cells
14
primary cell
Organ
900
pancreas
738
liver
681
connective tissue
491
epithelium
490
adipose tissue
393
heart
354
kidney
283
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
754
AMP
Genome assembly (visualization)
586
hg19
489
GRCh38
Lab
683
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
files.file_type!
tagAlign bed3+
month_released!
April, 2018
November, 2018
BIOSAMPLE
ASSAY
754 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
DNase-seq
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
141
167
20
1
3
1
1
1
1
right lobe of liver
10
3
1
1
1
2
spleen
14
1
1
cell line
HepG2
333
14
1
2
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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