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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
27
DNA binding
9
DNA accessibility
Target of assay
25
transcription factor
2
RNA binding protein
2
chromatin remodeller
Date released
27
December, 2018
January, 2019
November, 2018
8
January, 2021
1
January, 2018
Available data
28
bigWig
27
bam
27
bed narrowPeak
27
bigBed narrowPeak
27
fastq
Organism
36
Homo sapiens
Biosample type
28
cell line
8
primary cell
Organ
939
pancreas
733
liver
683
connective tissue
524
epithelium
490
adipose tissue
393
heart
354
kidney
283
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
43
nerve
37
embryo
36
blood
36
bodily fluid
22
vein
20
lung
18
ureter
16
skeleton
9
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
28
AMP
8
T1D
Genome assembly (visualization)
28
hg19
27
GRCh38
Lab
28
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
tagAlign bed3+
month_released!
January, 2019
November, 2018
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
27
1
primary cell
peripheral blood mononuclear cell
8
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