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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
ChIP-seq
46
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
179
DNA binding
50
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
97
transcription factor
61
histone modification
60
histone
34
broad histone mark
29
control
26
narrow histone mark
24
RNA binding protein
16
recombinant protein
chromatin remodeller
Date released
November, 2017
May, 2020
60
December, 2017
54
August, 2017
48
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
176
bigWig
166
bam
157
bed narrowPeak
142
fastq
101
bigBed narrowPeak
30
tsv
24
tagAlign
13
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
274
Homo sapiens
Biosample type
166
tissue
80
cell line
14
in vitro differentiated cells
14
primary cell
Organ
946
pancreas
682
connective tissue
517
epithelium
491
adipose tissue
393
heart
354
kidney
274
liver
230
vasculature
227
blood vessel
194
brain
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
274
AMP
Genome assembly (visualization)
181
hg19
144
GRCh38
Lab
203
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
25
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
files.file_type!
tagAlign bed3+
month_released!
May, 2020
November, 2017
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
274 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
93
24
20
2
3
1
1
1
1
1
right lobe of liver
10
3
1
2
1
2
cell line
HepG2
58
14
1
1
2
2
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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