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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
ChIP-seq
26
ATAC-seq
20
total RNA-seq
9
DNase-seq
7
WGBS
2
Hi-C
1
FAIRE-seq
1
single cell RNA-seq
Assay category
163
DNA binding
36
DNA accessibility
21
Transcription
7
DNA methylation
2
3D chromatin structure
Target of assay
71
transcription factor
70
histone
70
histone modification
43
broad histone mark
27
narrow histone mark
26
RNA binding protein
22
control
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
313
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
225
bam
176
bigWig
175
bed narrowPeak
137
bigBed narrowPeak
88
fastq
20
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
Organism
229
Homo sapiens
Biosample type
146
tissue
77
cell line
5
in vitro differentiated cells
1
primary cell
Organ
62
pancreas
57
heart
53
liver
23
kidney
16
epithelium
15
blood
15
bodily fluid
9
spleen
2
adipose tissue
2
brain
2
connective tissue
Project
229
AMP
Genome assembly (visualization)
200
GRCh38
195
hg19
Lab
229
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
tagAlign bed3+
BIOSAMPLE
ASSAY
229 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
FAIRE-seq
single cell RNA-seq
tissue
islet of Langerhans
19
19
1
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
+ See 8 more…
cell line
HepG2
45
1
EndoC_BH1
13
1
1
1
GM12878
15
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic cell
1
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