Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
61
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
4
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
61
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
39
transcription factor
20
histone
20
histone modification
control
11
narrow histone mark
9
broad histone mark
3
RNA binding protein
2
chromatin remodeller
Date released
712
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
274
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
136
bed narrowPeak
123
tsv
77
bigWig
71
bam
64
xls
57
txt
31
fastq
30
bigBed narrowPeak
16
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
337
Homo sapiens
Biosample type
232
tissue
68
cell line
35
in vitro differentiated cells
3
primary cell
Organ
130
kidney
92
heart
31
liver
27
blood
27
bodily fluid
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
5
epithelium
4
pancreas
3
spleen
2
artery
1
adipose tissue
Project
338
AMP
Genome assembly (visualization)
135
GRCh38
90
hg19
Lab
174
AMP-T2D consortium
128
Katalin Susztak, Upenn
32
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
inconsistent control
files.file_type!
tagAlign bed3+
month_released!
October, 2017
target.investigated_as!
control
BIOSAMPLE
ASSAY
338 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 12 more…
cell line
HepG2
9
14
2
2
1
GM12878
27
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
10
7
14
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
3
See all biosamples
Download