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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
108
ATAC-seq
65
ChIP-seq
1
pCHi-C
Assay category
190
Transcription
108
DNA accessibility
65
DNA binding
Target of assay
39
histone
39
histone modification
29
narrow histone mark
26
control
10
broad histone mark
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
278
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
8
January, 2018
8
November, 2020
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
298
bam
274
bigWig
189
tsv
64
tagAlign
39
bed narrowPeak
17
fastq
6
bigBed narrowPeak
4
bed broadPeak
Organism
364
Homo sapiens
Biosample type
216
tissue
147
primary cell
1
cell line
Organ
194
liver
16
brain
5
pancreas
1
adipose tissue
1
connective tissue
1
spleen
Project
319
AMP
45
T1D
Genome assembly (visualization)
273
hg19
221
GRCh38
Lab
318
AMP-T2D consortium
45
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
8
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
tagAlign bed3+
organ_slims!
epithelium
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
364 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
brain
15
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
+ See 2 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
HepG2
1
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