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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
24
total RNA-seq
21
ATAC-seq
5
DNase-seq
4
Hi-C
4
pCHi-C
Assay category
203
DNA binding
26
DNA accessibility
24
Transcription
4
3D chromatin structure
Target of assay
172
histone
172
histone modification
129
narrow histone mark
43
broad histone mark
31
control
Date released
675
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
261
October, 2019
183
August, 2021
153
February, 2023
135
July, 2018
130
June, 2019
120
May, 2022
115
May, 2019
91
July, 2019
88
November, 2018
75
December, 2017
74
October, 2018
57
April, 2019
56
March, 2020
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
2
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
May, 2023
1
October, 2022
Available data
201
bam
170
bigWig
159
bed narrowPeak
56
bigBed narrowPeak
49
tagAlign
10
tsv
6
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bedpe bed3+
3
hic
1
hdf5
tagAlign bed3+
Organism
261
Homo sapiens
Biosample type
237
tissue
15
cell line
8
in vitro differentiated cells
1
primary cell
Organ
85
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
epithelium
kidney
26
artery
21
eye
21
vein
18
pancreas
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
261
AMP
Genome assembly (visualization)
177
hg19
171
GRCh38
Lab
261
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
tagAlign bed3+
organ_slims!
epithelium
kidney
BIOSAMPLE
ASSAY
261 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
brain
5
1
+ See 77 more…
cell line
Panc1
13
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
adipocyte
2
primary cell
Heart fetal (cardiac muscle cell)
1
See all biosamples
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