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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
34
DNase-seq
7
ATAC-seq
6
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
47
DNA binding
41
DNA accessibility
6
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
12
control
Date released
47
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
1
March, 2020
Available data
88
bam
71
bed narrowPeak
70
bigWig
64
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
100
Homo sapiens
Biosample type
100
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
285
brain
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
100
AMP
Genome assembly (visualization)
75
GRCh38
75
hg19
Lab
100
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
tagAlign bed3+
organ_slims!
ureter
vasculature
BIOSAMPLE
ASSAY
100 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
islet of Langerhans
5
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