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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
184
DNA binding
10
DNA accessibility
7
DNA methylation
1
3D chromatin structure
1
Transcription
Target of assay
98
transcription factor
60
histone
60
histone modification
37
broad histone mark
27
RNA binding protein
24
control
23
narrow histone mark
16
recombinant protein
9
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
318
August, 2021
313
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
200
bam
175
bigWig
168
bed narrowPeak
167
bigBed narrowPeak
123
fastq
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
203
Homo sapiens
Biosample type
113
tissue
89
cell line
1
primary cell
Organ
57
heart
54
liver
42
blood
42
bodily fluid
23
kidney
16
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
203
AMP
Genome assembly (visualization)
173
GRCh38
166
hg19
Lab
203
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
tar
vcf
BIOSAMPLE
ASSAY
203 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
Hi-C
single cell RNA-seq
tissue
heart left ventricle
35
kidney
23
spleen
13
1
2
heart right ventricle
13
heart
9
+ See 6 more…
cell line
HepG2
45
1
1
GM12878
42
primary cell
pancreatic cell
1
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