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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
ChIP-seq
36
DNase-seq
36
total RNA-seq
32
ATAC-seq
6
pCHi-C
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
1
FAIRE-seq
Assay category
153
DNA binding
69
DNA accessibility
43
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
190
histone
190
histone modification
120
narrow histone mark
broad histone mark
32
control
4
RNA binding protein
4
transcription factor
Date released
104
October, 2019
49
November, 2017
37
June, 2019
32
February, 2023
19
July, 2019
13
February, 2020
13
May, 2019
6
October, 2017
2
March, 2020
2
November, 2018
Available data
189
bam
175
bed narrowPeak
168
bigWig
75
bigBed narrowPeak
73
tagAlign
47
bed broadPeak
42
bigBed broadPeak
39
bed bed3+
31
tsv
15
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
277
Homo sapiens
Biosample type
251
tissue
26
primary cell
Organ
864
pancreas
713
liver
635
connective tissue
474
epithelium
470
adipose tissue
244
heart
216
brain
209
kidney
184
vasculature
178
blood vessel
159
bone element
125
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
27
nerve
25
embryo
21
spleen
20
lung
18
ureter
16
skeleton
12
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
277
AMP
Genome assembly (visualization)
173
hg19
162
GRCh38
Lab
277
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
tar
month_released!
August, 2021
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
277 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
tissue
brain
7
14
1
1
1
islet of Langerhans
2
14
2
4
retina
3
3
15
pigmented layer of retina
2
12
layer of hippocampus
11
+ See 79 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
retinal pigment epithelial cell
3
1
1
brain pericyte
1
1
+ See 3 more…
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